In this article you will find information on the different types of configuration pipelines for the Rat species. The configuration include:
Rat low-pass v1.0
- Reference genome: rn6
- Imputation reference panel: 42 rat genomes described in Hermsen et al. (2015) and lifted over to rn6, containing 8.7M variants.
- Strain analysis panel: The same 42 rat genomes used for the imputation reference panel.
- Deliverables: original FASTQ, aligned BAM (and index), imputed VCF (and index), strain analysis