In this article you will find information on the different types of configuration pipelines for the Mouse species. The configuration include:
Mouse low-pass v1.0
- Reference genome: GRCm38_68
- Imputation reference panel: The Mouse Genomes Project contains ~59M SNPs discovered in 36 sequenced lines.
- Deliverables: original FASTQ, aligned BAM (and index), imputed VCF (and index)