In this article you will find information on the different types of configuration pipelines for the Canine species. The configuration include:
Dog low-pass v2.0
- Reference genome: canFam3
- Imputation reference panel: A reference panel of 676 sequenced dogs and 53M sites.
- Breed analysis reference panel: This panel contains data from 91 breeds listed here
- Deliverables: original FASTQ, aligned BAM (and index), imputed VCF (and index), breed analysis