bases_min
What is it?
- This QC checks that the number of bases in the FASTQ files uploaded are above a given minimum number to ensure that there is sufficient input data to perform high-quality analysis
Possible reasons for failure:
- Insufficient number of bases sequenced
Troubleshooting:
- Make sure that samples uploaded to the Gencove platform are sequenced to the specified minimum coverage
bases_max
What is it?
- This QC checks that the number of bases in the FASTQ files uploaded are below a given maximum number
Possible reasons for failure:
- An excessive number of bases sequenced (i.e., the sample is sequenced to too high of a coverage for Gencove’s standard pipeline)
Troubleshooting:
- Make sure that samples uploaded to the Gencove platform are not sequenced to a coverage beyond the specified maximum