r1_r2_ids_match
What is it?
- If paired-end reads are uploaded, this QC checks that the read pairs in the
R1
andR2
FASTQ files have the same names and are in the same order
Possible reasons for failure:
- Reads in the FASTQ pairs are not in the same order in the
R1
andR2
files
Troubleshooting:
- Make sure that the FASTQ files you’re uploading are sorted (i.e., have the read pairs in the same order in both files)