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  1. Gencove
  2. FAQs
  3. Gencove Methodologies

Gencove Methodologies

  • What is Effective Coverage?
  • What program is used for genotype imputation?
  • How do you impute genotypes when there are no reads at a site?
  • How do you calculate contamination for a sample?
  • Can I get access to the variants called directly from the BAMs before imputation?
  • What does the LOWCONF filter mean for a variant?
  • Can you share any open-source bioinformatics tools in your production pipelines?
  • What tool is used for CNV calling?

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