The `LOWCONF`

filter indicates that the variant was not imputed with high confidence. More precisely, it means that none of the posterior probabilities for the possible genotypes (`0`

, `1`

, or `2`

) for that variant exceeded `0.9`

.

`LOWCONF`

filter indicates that the variant was not imputed with high confidence. More precisely, it means that none of the posterior probabilities for the possible genotypes (`0`

, `1`

, or `2`

) for that variant exceeded `0.9`

.